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Project Ideas for Doctor of Philosophy in Biochemistry and Molecular Structural Biology

An advanced research PhD focused on cellular mechanisms, structural biology, and biochemical pathways in health and disease.

🏛 Introduction

NYU’s PhD in Biochemistry trains scientists to explore the molecular machinery of life, focusing on protein structure, enzymatic pathways, gene regulation, and cellular signaling. With access to world-class labs, students apply techniques in X-ray crystallography, NMR, CRISPR, and mass spectrometry. The program emphasizes translational research in cancer, neurodegeneration, and immunology. Graduates lead in academia, biotech, and pharmaceutical innovation.

💡 Suggested Project Titles

Structural analysis of kinase inhibitors binding to mutated cancer signaling proteins via cryo-EM techniques

Investigating post-translational modifications in Alzheimer’s disease-related tau aggregation pathways

CRISPR-based gene knockdown for metabolic pathway dissection in mitochondrial dysfunction disorders

Studying ribosomal stalling mechanisms using nascent chain profiling and ribosome footprinting

Mechanistic investigation of DNA repair enzymes using mutational scanning and kinetic assays

Designing allosteric inhibitors targeting HIV reverse transcriptase for drug-resistance suppression

Isotopic labeling of peptides for real-time proteasome degradation monitoring

High-throughput screening of small molecules affecting unfolded protein response in ER stress conditions

ATPase activity regulation in molecular chaperones involved in protein folding diseases

Quantifying coenzyme utilization in bacterial vs. eukaryotic metabolic enzymes under stress

Lipid–protein interaction studies using surface plasmon resonance and fluorescent lipid analogs

Comparing antioxidant enzymatic activity in age-related tissue degeneration across species

Structural elucidation of multi-subunit protein complexes involved in immune signaling

Single-molecule FRET to analyze enzyme conformational changes during catalysis

Investigating chromatin remodeling enzymes using site-directed mutagenesis

Kinetic modeling of glycolytic flux under hypoxic conditions in tumor microenvironments

RNA-binding protein mapping via CLIP-seq in neuronal differentiation

Analysis of proteolytic processing in apoptotic cell death pathways

Studying coenzyme Q biosynthesis enzymes for targeted mitochondrial therapy

Engineering riboswitches for synthetic biology applications in drug-sensing biosensors

New York University – Doctor of Philosophy in Biochemistry

Advance biomedical research at the molecular level in NYU’s cutting-edge Biochemistry PhD.

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